PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 233aa    MW: 26384.5 Da    PI: 10.3039
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220213.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-17134223198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k+++ps+v+   +l l  +f++eh  +    ++  +tl de+g ++   +  rk++    l++GWk+F+ a++L +gD +vF+l++r+ f  +
  XP_008220213.1 134 FVKTMLPSHVSGGFWLGLQVQFCKEHlpK----GDEVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRRTAF--K 218
                     89************************543....4458***************656665....**************************9999..7 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v ++r
  XP_008220213.1 219 VYILR 223
                     77766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-24128224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-21129223IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-27132223No hitNo description
PROSITE profilePS5086311.476134225IPR003340B3 DNA binding domain
SMARTSM010191.4E-24134225IPR003340B3 DNA binding domain
PfamPF023621.1E-14134223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGKIVMAKSK LSYEESRRQR LEENKKRMEA LNLPQLAQAL KTTSSPKPSP MKRTKPRTVE  60
KQMVVVRRSS RVANLPTPVY KEVVVDRVMI PRKSYSSRHR DLSNRVYASD EARAEAMERA  120
ENLESGLGSD HPIFVKTMLP SHVSGGFWLG LQVQFCKEHL PKGDEVMTLI DEDGDEYPTI  180
YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRRTAFKVY ILRVGRPEDG NKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220213.11e-173PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-81Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLM5XC021e-133M5XC02_PRUPE; Uncharacterized protein
STRINGGLYMA04G04030.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-76B3 family protein